ESLPred (Bhasin and Raghava, 2004) uses Abutment Agent Apparatus and PSI-BLAST to accredit eukaryotic proteins to the nucleus, mitochondrion, cytoplasm, or extracellular space.
LOCHom database of sub cellular localization predictions based on arrangement homology. Currently Predicts Subcellular Localization of proteins from the afterward database: SWISS-PROT proteins, Arabidopsis thaliana (plant), Caenorhabditis elegans (worm), Drosophila melanogaster (fly), Mus musculus (mouse), and Homosapiens (human) sub cellular protein localization databases.
HSLpred (Bhasin et al, 2005) is a localization anticipation apparatus for animal proteins which utilizes abutment agent apparatus and PSI-BLAST to accomplish predictions for 4 localization sites.
LOCSVMPSI (Xie et al, 2005, NAR in press) is a eukaryotic localization anticipation adjustment that incorporates evolutionary advice into its predictions. The adjustment uses PSI-BLAST and abutment agent apparatus to accomplish predictions for up to 12 localization sites.
LOC3d database of predicted sub cellular localization for eukaryotic PDB chains. Subcellular localization is currently predicted application four altered methods: predictNLS (nuclear localization signal), LOChom (application affinity), LOCkey (using keywords) and LOC3d (neural arrangement based prediction). The appear localization is based on the adjustment which predicts localization of a accustomed protein with the accomplished confidence.
LOCtree (Nair and Rost, 2005). LOCtree is a eukaryotic and prokaryotic localization anticipation apparatus accessible at the CUBIC site. Databases of localization predictions fabricated by CUBIC's servers are as well accessible and are declared below.
NucPred (Heddad et al, 2004) uses the attendance of nuclear localization signals articular through an abiogenetic programming algorithm as the base of its allocation method.
Predotar is advised to adumbrate the attendance of mitochondrial and corpuscle targeting peptides in bulb sequences.
PredictNLS (Cokol et al, 2000) uses nuclear localization arresting motifs to adumbrate whether protein ability be localized to the nucleus
PSLT (Scott et al, 2004) is a Bayesian network-based adjustment that predicts animal protein localization based on motif/domain co-occurence. The apparatus is not yet accessible online, about its predictions for 9793 animal proteins in SWISS-PROT are accessible for download from the PSLT site.
PSLIP (Sarda et al, 2005) uses abutment agent apparatus and assorted physiochemical backdrop of amino acids to accredit a eukaryotic protein to one of six localization sites.
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